Publications
2020
Ribosomes Guide Pachytene piRNA Formation on Long Intergenic piRNA Precursors.
Sun YH, Zhu J, Xie LH, Li Z, Meduri R, Zhu X, Song C, Chen C, Ricci EP, Weng Z, Li XZ. Nat Cell Biol. 2020 Feb;22(2):200-212.
doi: 10.1038/s41556-019-0457-4.
Sun YH, Zhu J, Xie LH, Li Z, Meduri R, Zhu X, Song C, Chen C, Ricci EP, Weng Z, Li XZ. Nat Cell Biol. 2020 Feb;22(2):200-212.
doi: 10.1038/s41556-019-0457-4.
2019
A cohesin/HUSH- and LINC-dependent pathway controls ribosomal DNA double-strand break repair.
Marnef A, Finoux AL, Arnould C, Guillou E, Daburon V, Rocher V, Mangeat T, Mangeot PE, Ricci EP, Legube G. Genes Dev. 2019 Sep 1;33(17-18):1175-1190. doi: 10.1101/gad.324012.119. PMID: 31395742
Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription.
Rivosecchi J, Larochelle M, Teste C, Grenier F, Malapert A, Ricci EP, Bernard P, Bachand F, Vanoosthuyse V. EMBO. 2019 Aug 15;38(16):e101955. doi: 10.15252/embj.2019101955. PMID: 31294478
Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins.
Mangeot PE, Risson V, Fusil F, Marnef A, Laurent E, Blin J, Mournetas V, Massouridès E, Sohier TJM, Corbin A, Aubé F, Teixeira M, Pinset C, Schaeffer L, Legube G, Cosset FL, Verhoeyen E, Ohlmann T, Ricci EP. Nat Commun. 2019 Jan 3;10(1):45. doi: 10.1038/s41467-018-07845-z. PMID: 30604748
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, Sanz MA, Carrasco L, Ricci EP, Pelechano V, Davis I, Fischer B, Mohammed S, Castello A. Mol Cell. 2019 Apr 4;74(1):196-211.e11. doi: 10.1016/j.molcel.2019.01.017. Epub 2019 Feb 21. PMID: 30799147
Marnef A, Finoux AL, Arnould C, Guillou E, Daburon V, Rocher V, Mangeat T, Mangeot PE, Ricci EP, Legube G. Genes Dev. 2019 Sep 1;33(17-18):1175-1190. doi: 10.1101/gad.324012.119. PMID: 31395742
Senataxin homologue Sen1 is required for efficient termination of RNA polymerase III transcription.
Rivosecchi J, Larochelle M, Teste C, Grenier F, Malapert A, Ricci EP, Bernard P, Bachand F, Vanoosthuyse V. EMBO. 2019 Aug 15;38(16):e101955. doi: 10.15252/embj.2019101955. PMID: 31294478
Genome editing in primary cells and in vivo using viral-derived Nanoblades loaded with Cas9-sgRNA ribonucleoproteins.
Mangeot PE, Risson V, Fusil F, Marnef A, Laurent E, Blin J, Mournetas V, Massouridès E, Sohier TJM, Corbin A, Aubé F, Teixeira M, Pinset C, Schaeffer L, Legube G, Cosset FL, Verhoeyen E, Ohlmann T, Ricci EP. Nat Commun. 2019 Jan 3;10(1):45. doi: 10.1038/s41467-018-07845-z. PMID: 30604748
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, Sanz MA, Carrasco L, Ricci EP, Pelechano V, Davis I, Fischer B, Mohammed S, Castello A. Mol Cell. 2019 Apr 4;74(1):196-211.e11. doi: 10.1016/j.molcel.2019.01.017. Epub 2019 Feb 21. PMID: 30799147
2018
The long noncoding RNA CHROME regulates cholesterol homeostasis in primates.
Hennessy EJ, Solingen C van, Scacalossi KR, Ouimet M, Afonso MS, Prins J, Koelwyn GJ, Sharma M, Ramkhelawon B, Carpenter S, Busch A, Chernogubova E, Matic LP, Hedin U, Maegdefessel L, Caffrey BE, Hussein MA, Ricci EP, Temel RE, Garabedian MJ, Berger JS, Vickers KC, Kanke M, Sethupathy P, Teupser D, Holdt LM, Moore KJ. Nature Metabolism. 2018.
Hennessy EJ, Solingen C van, Scacalossi KR, Ouimet M, Afonso MS, Prins J, Koelwyn GJ, Sharma M, Ramkhelawon B, Carpenter S, Busch A, Chernogubova E, Matic LP, Hedin U, Maegdefessel L, Caffrey BE, Hussein MA, Ricci EP, Temel RE, Garabedian MJ, Berger JS, Vickers KC, Kanke M, Sethupathy P, Teupser D, Holdt LM, Moore KJ. Nature Metabolism. 2018.
PDZ domain-binding motif of Tax sustains T-cell proliferation in HTLV-1-infected humanized mice.
Pérès E, Blin J, Ricci EP, Artesi M, Hahaut V, Van den Broeke A, Corbin A, Gazzolo L, Ratner L, Jalinot P, Duc Dodon M. PLoS Pathog. 2018 March 22;14(3):e1006933. doi: 10.1371/journal.ppat.1006933. PMID: 29566098
Pérès E, Blin J, Ricci EP, Artesi M, Hahaut V, Van den Broeke A, Corbin A, Gazzolo L, Ratner L, Jalinot P, Duc Dodon M. PLoS Pathog. 2018 March 22;14(3):e1006933. doi: 10.1371/journal.ppat.1006933. PMID: 29566098
2017
Efficient genome editing in primary cells and in vivo using viral-derived "Nanoblades" loaded with Cas9/sgRNA ribonucleoproteins
Mangeot PE, Rissons V, Fusil F, Marnef A, Laurent E, Blin J, Mournetas V, Massouridès E, Sohier TJM, Corbin A, Aube F, Pinset C, Schaeffer L, Legube G, Cosset FL, Verhoeyen E, Ohlmann T, Ricci EP. BioRxiv. 2017 May 5;45(8):4810-4824. doi: 10.1101/202010 microRNAs stimulate translation initiation mediated by HCV-like IRESes.
Mengardi C, Limousin T, Ricci EP, Soto-Rifo R, Decimo D, Ohlmann T. Nucleic Acids Res. 2017 October 5;45(8):4810-4824. doi: 10.1093/nar/gkw1345. PMID: 28077561 |
When mRNA translation meets decay.
Bicknell AA, Ricci EP.
Biochem Soc Trans. 2017 Apr 15;45(2):339-351. doi: 10.1042/BST20160243. Review. PMID: 28408474
Bicknell AA, Ricci EP.
Biochem Soc Trans. 2017 Apr 15;45(2):339-351. doi: 10.1042/BST20160243. Review. PMID: 28408474
An intimate look at the viral replication cycle through ribosome profiling.
Blin J, Ricci EP.
Med Sci (Paris). 2016 Oct;32(10):849-860. Epub 2016 Oct 19. French. PMID: 27758749
Blin J, Ricci EP.
Med Sci (Paris). 2016 Oct;32(10):849-860. Epub 2016 Oct 19. French. PMID: 27758749
2016
A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation.
Atianand MK, Hu W, Satpathy AT, Shen Y, Ricci EP, Alvarez-Dominguez JR, Bhatta A, Schattgen SA, McGowan JD, Blin J, Braun JE, Gandhi P, Moore MJ, Chang HY, Lodish HF, Caffrey DR, Fitzgerald KA.
Cell. 2016 Jun 16;165(7):1672-1685. doi: 10.1016/j.cell.2016.05.075. PMID: 27315481
Atianand MK, Hu W, Satpathy AT, Shen Y, Ricci EP, Alvarez-Dominguez JR, Bhatta A, Schattgen SA, McGowan JD, Blin J, Braun JE, Gandhi P, Moore MJ, Chang HY, Lodish HF, Caffrey DR, Fitzgerald KA.
Cell. 2016 Jun 16;165(7):1672-1685. doi: 10.1016/j.cell.2016.05.075. PMID: 27315481
Biogenesis and function of tRNA fragments during sperm maturation and fertilization in mammals.
Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, Moore MJ, Sullivan R, Mello CC, Garber M, Rando OJ.
Science. 2016 Jan 22;351(6271):391-396. doi: 10.1126/science.aad6780. Epub 2015 Dec 31. PMID: 26721685
* Interview by Le Monde: http://www.lemonde.fr/sciences/article/2016/01/04/des-spermatozoides-sous-influence_4841467_1650684.html
Sharma U, Conine CC, Shea JM, Boskovic A, Derr AG, Bing XY, Belleannee C, Kucukural A, Serra RW, Sun F, Song L, Carone BR, Ricci EP, Li XZ, Fauquier L, Moore MJ, Sullivan R, Mello CC, Garber M, Rando OJ.
Science. 2016 Jan 22;351(6271):391-396. doi: 10.1126/science.aad6780. Epub 2015 Dec 31. PMID: 26721685
* Interview by Le Monde: http://www.lemonde.fr/sciences/article/2016/01/04/des-spermatozoides-sous-influence_4841467_1650684.html
2015
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.
Cenik C, Cenik ES, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci EP, Snyder MP.
Genome Res. 2015 Nov;25(11):1610-21. doi: 10.1101/gr.193342.115. Epub 2015 Aug 21. PMID: 26297486
Cenik C, Cenik ES, Byeon GW, Grubert F, Candille SI, Spacek D, Alsallakh B, Tilgner H, Araya CL, Tang H, Ricci EP, Snyder MP.
Genome Res. 2015 Nov;25(11):1610-21. doi: 10.1101/gr.193342.115. Epub 2015 Aug 21. PMID: 26297486
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments.
Heyer EE, Ozadam H, Ricci EP, Cenik C, Moore MJ.
Nucleic Acids Res. 2015 Jan;43(1):e2. doi: 10.1093/nar/gku1235. Epub 2014 Dec 12. PMID: 25505164
Heyer EE, Ozadam H, Ricci EP, Cenik C, Moore MJ.
Nucleic Acids Res. 2015 Jan;43(1):e2. doi: 10.1093/nar/gku1235. Epub 2014 Dec 12. PMID: 25505164
2014
HIV-2 genomic RNA accumulates in stress granules in the absence of active translation.
Soto-Rifo R, Valiente-Echeverria F, Rubilar PS, Garcia-de-Gracia F, Ricci EP, Limousin T, Décimo D, Mouland AJ, Ohlmann T.
Nucleic Acids Res. 2014 Nov 10;42(20):12861-75. doi: 10.1093/nar/gku1017. Epub 2014 Oct 28. PMID: 25352557
Soto-Rifo R, Valiente-Echeverria F, Rubilar PS, Garcia-de-Gracia F, Ricci EP, Limousin T, Décimo D, Mouland AJ, Ohlmann T.
Nucleic Acids Res. 2014 Nov 10;42(20):12861-75. doi: 10.1093/nar/gku1017. Epub 2014 Oct 28. PMID: 25352557
Post-transcriptional regulation of gene expression in innate immunity.
Carpenter S*, Ricci EP*, Mercier BC*, Moore MJ, Fitzgerald KA.
Nat Rev Immunol. 2014 Jun;14(6):361-76. doi: 10.1038/nri3682. Review. PMID: 24854588 * Equal Contribution
Carpenter S*, Ricci EP*, Mercier BC*, Moore MJ, Fitzgerald KA.
Nat Rev Immunol. 2014 Jun;14(6):361-76. doi: 10.1038/nri3682. Review. PMID: 24854588 * Equal Contribution
RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes.
Singh G, Ricci EP, Moore MJ.
Methods. 2014 Feb;65(3):320-32. doi: 10.1016/j.ymeth.2013.09.013. Epub 2013 Oct 2. PMID: 24096052
Singh G, Ricci EP, Moore MJ.
Methods. 2014 Feb;65(3):320-32. doi: 10.1016/j.ymeth.2013.09.013. Epub 2013 Oct 2. PMID: 24096052
Staufen1 senses overall transcript secondary structure to regulate translation.
Ricci EP, Kucukural A, Cenik C, Mercier BC, Singh G, Heyer EE, Ashar-Patel A, Peng, Moore MJ.
Nat Struct Mol Biol. 2014 Jan;21(1):26-35. doi: 10.1038/nsmb.2739. Epub 2013 Dec 15. PMID: 24336223
Ricci EP, Kucukural A, Cenik C, Mercier BC, Singh G, Heyer EE, Ashar-Patel A, Peng, Moore MJ.
Nat Struct Mol Biol. 2014 Jan;21(1):26-35. doi: 10.1038/nsmb.2739. Epub 2013 Dec 15. PMID: 24336223
2013
A long noncoding RNA mediates both activation and repression of immune response genes.
Carpenter S, Aiello D, Atianand MK, Ricci EP, Gandhi P, Hall LL, Byron M, Monks B, Henry-Bezy M, Lawrence JB, O'Neill LA, Moore MJ, Caffrey DR, Fitzgerald KA.
Science. 2013 Aug 16;341(6147):789-92. doi: 10.1126/science.1240925. Epub 2013 Aug 1. PMID: 23907535
Carpenter S, Aiello D, Atianand MK, Ricci EP, Gandhi P, Hall LL, Byron M, Monks B, Henry-Bezy M, Lawrence JB, O'Neill LA, Moore MJ, Caffrey DR, Fitzgerald KA.
Science. 2013 Aug 16;341(6147):789-92. doi: 10.1126/science.1240925. Epub 2013 Aug 1. PMID: 23907535
miRNA repression of translation in vitro takes place during 43S ribosomal scanning.
Ricci EP, Limousin T, Soto-Rifo R, Rubilar PS, Decimo D, Ohlmann T.
Nucleic Acids Res. 2013 Jan 7;41(1):586-98. doi: 10.1093/nar/gks1076. Epub 2012 Nov 17. PMID: 23161679
Ricci EP, Limousin T, Soto-Rifo R, Rubilar PS, Decimo D, Ohlmann T.
Nucleic Acids Res. 2013 Jan 7;41(1):586-98. doi: 10.1093/nar/gks1076. Epub 2012 Nov 17. PMID: 23161679
2012
Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation.
Soto-Rifo R, Limousin T, Rubilar PS, Ricci EP, Décimo D, Moncorgé O, Trabaud MA, André P, Cimarelli A, Ohlmann T.
Nucleic Acids Res. 2012 Mar;40(6):2653-67. doi: 10.1093/nar/gkr1093. Epub 2011 Nov 24. PMID: 22121214
Soto-Rifo R, Limousin T, Rubilar PS, Ricci EP, Décimo D, Moncorgé O, Trabaud MA, André P, Cimarelli A, Ohlmann T.
Nucleic Acids Res. 2012 Mar;40(6):2653-67. doi: 10.1093/nar/gkr1093. Epub 2011 Nov 24. PMID: 22121214
The Andes hantavirus NSs protein is expressed from the viral small mRNA by a leaky scanning mechanism.
Vera-Otarola J, Solis L, Soto-Rifo R, Ricci EP, Pino K, Tischler ND, Ohlmann T, Darlix JL, López-Lastra M.
J Virol. 2012 Feb;86(4):2176-87. doi: 10.1128/JVI.06223-11. Epub 2011 Dec 7. PMID: 22156529
Vera-Otarola J, Solis L, Soto-Rifo R, Ricci EP, Pino K, Tischler ND, Ohlmann T, Darlix JL, López-Lastra M.
J Virol. 2012 Feb;86(4):2176-87. doi: 10.1128/JVI.06223-11. Epub 2011 Dec 7. PMID: 22156529
2011
Activation of a microRNA response in trans reveals a new role for poly(A) in translational repression.
Ricci EP, Limousin T, Soto-Rifo R, Allison R, Pöyry T, Decimo D, Jackson RJ, Ohlmann T.
Nucleic Acids Res. 2011 Jul;39(12):5215-31. doi: 10.1093/nar/gkr086. Epub 2011 Mar 8. PMID: 21385827
Ricci EP, Limousin T, Soto-Rifo R, Allison R, Pöyry T, Decimo D, Jackson RJ, Ohlmann T.
Nucleic Acids Res. 2011 Jul;39(12):5215-31. doi: 10.1093/nar/gkr086. Epub 2011 Mar 8. PMID: 21385827
2010
The 3' untranslated region of the Andes hantavirus small mRNA functionally replaces the poly(A) tail and stimulates cap-dependent translation initiation from the viral mRNA.
Vera-Otarola J, Soto-Rifo R, Ricci EP, Ohlmann T, Darlix JL, López-Lastra M.
J Virol. 2010 Oct;84(19):10420-4. doi: 10.1128/JVI.01270-10. Epub 2010 Jul 21. PMID: 20660206
Vera-Otarola J, Soto-Rifo R, Ricci EP, Ohlmann T, Darlix JL, López-Lastra M.
J Virol. 2010 Oct;84(19):10420-4. doi: 10.1128/JVI.01270-10. Epub 2010 Jul 21. PMID: 20660206
2009
Structural and functional diversity of viral IRESes.
Balvay L, Soto Rifo R, Ricci EP, Decimo D, Ohlmann T.
Biochim Biophys Acta. 2009 Sep-Oct;1789(9-10):542-57. doi: 10.1016/j.bbagrm.2009.07.005. Epub 2009 Jul 24. Review. PMID: 19632368
Balvay L, Soto Rifo R, Ricci EP, Decimo D, Ohlmann T.
Biochim Biophys Acta. 2009 Sep-Oct;1789(9-10):542-57. doi: 10.1016/j.bbagrm.2009.07.005. Epub 2009 Jul 24. Review. PMID: 19632368
Translation of intronless RNAs is strongly stimulated by the Epstein-Barr virus mRNA export factor EB2.
Ricci EP*, Mure F*, Gruffat H, Decimo D, Medina-Palazon C, Ohlmann T, Manet E.
Nucleic Acids Res. 2009 Aug;37(15):4932-43. doi: 10.1093/nar/gkp497. Epub 2009 Jun 15. PMID: 19528074 * Equal Contribution
Ricci EP*, Mure F*, Gruffat H, Decimo D, Medina-Palazon C, Ohlmann T, Manet E.
Nucleic Acids Res. 2009 Aug;37(15):4932-43. doi: 10.1093/nar/gkp497. Epub 2009 Jun 15. PMID: 19528074 * Equal Contribution
2008
Lentiviral RNAs can use different mechanisms for translation initiation.
Ricci EP, Soto Rifo R, Herbreteau CH, Decimo D, Ohlmann T.
Biochem Soc Trans. 2008 Aug;36(Pt 4):690-3. doi: 10.1042/BST0360690. PMID: 18631141
Ricci EP, Soto Rifo R, Herbreteau CH, Decimo D, Ohlmann T.
Biochem Soc Trans. 2008 Aug;36(Pt 4):690-3. doi: 10.1042/BST0360690. PMID: 18631141
In vitro expression of the HIV-2 genomic RNA is controlled by three distinct internal ribosome entry segments that are regulated by the HIV protease and the Gag polyprotein.
Ricci EP, Herbreteau CH, Decimo D, Schaupp A, Datta SA, Rein A, Darlix JL, Ohlmann T.
RNA. 2008 Jul;14(7):1443-55. doi: 10.1261/rna.813608. Epub 2008 May 21. PMID: 18495939
Ricci EP, Herbreteau CH, Decimo D, Schaupp A, Datta SA, Rein A, Darlix JL, Ohlmann T.
RNA. 2008 Jul;14(7):1443-55. doi: 10.1261/rna.813608. Epub 2008 May 21. PMID: 18495939
2007
Back to basics: the untreated rabbit reticulocyte lysate as a competitive system to recapitulate cap/poly(A) synergy and the selective advantage of IRES-driven translation.
Soto Rifo R, Ricci EP, Décimo D, Moncorgé O, Ohlmann T.
Nucleic Acids Res. 2007;35(18):e121. Epub 2007 Sep 18. PMID: 17881372
Soto Rifo R, Ricci EP, Décimo D, Moncorgé O, Ohlmann T.
Nucleic Acids Res. 2007;35(18):e121. Epub 2007 Sep 18. PMID: 17881372